Protein Info for Echvi_4342 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: transporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 401 to 421 (21 residues), see Phobius details amino acids 441 to 461 (21 residues), see Phobius details amino acids 473 to 494 (22 residues), see Phobius details amino acids 514 to 536 (23 residues), see Phobius details amino acids 542 to 566 (25 residues), see Phobius details amino acids 577 to 596 (20 residues), see Phobius details amino acids 627 to 645 (19 residues), see Phobius details amino acids 666 to 692 (27 residues), see Phobius details amino acids 712 to 734 (23 residues), see Phobius details amino acids 770 to 791 (22 residues), see Phobius details amino acids 801 to 821 (21 residues), see Phobius details amino acids 829 to 847 (19 residues), see Phobius details amino acids 853 to 874 (22 residues), see Phobius details PF00474: SSF" amino acids 432 to 835 (404 residues), 175.5 bits, see alignment E=5.1e-55 TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 432 to 836 (405 residues), 256 bits, see alignment E=3.5e-80

Best Hits

KEGG orthology group: None (inferred from 49% identity to hhy:Halhy_3292)

Predicted SEED Role

"Predicted sialic acid transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5F9 at UniProt or InterPro

Protein Sequence (903 amino acids)

>Echvi_4342 transporter, SSS family (Echinicola vietnamensis KMM 6221, DSM 17526)
MRAIIYITCILFFTSFGKVVCGQGLFDNYLGSFTFQDLPDLPANAGDSASHGYAGMFAGV
HQDVLILAGGANFPEEAPWNGGKKHFSQHIYVLEKSSHGYQWVAGLELKLPFPVAYGTSI
STPNGVLCVGGNDQGQTFNKAFLLKWNPALRQVELQYLPDLPLALSNSTGGLIGTNVYLA
GGEGEEVTDAFFRMDLGRDKLQWERLSPWPGKPRSHAMSAVQSNGVNDCFYLFGGRRKQQ
NDVSELYTDAYCYDPQKEVWKRLSEIQNEEGKPLTLSAGATGPQGAGQILFYGGVRGDVF
NELERYAEALSDPEDSVEYRQLMLDRNNLMENHPGFNRDILVYHTITDSWHTMGKLPFMT
PVTTTAVSWDGKMVLPSGEVSPGVRTASIHSVGFRKEGAFGWVNYTILGLYLGSLVLMGI
LISSKQHSTEDFFKAGGRVPWWAAGISIFGTQLSAITFMAIPAKTFATDWTLFFLLMTII
IVAPVIICIFLPFFRRLNITTAYEYLELRYNRSVRLIGSLIYVGLQLGRLGIVLLLPSLA
LTVVTGIDVSICILIMGLLSILYTVLGGIEAVIWTDVIQVVVLLGGALICLGFVFYEIHE
GPAELMAMVRDNQKGKIFDMRMDFTGTSFWVVLVGGIAANIVQYGSDQTVVQRYLTTKDE
RSAANGIVTGALMALPSALIFFSMGTALYLFYKLHPAELSPAVQNTDSIFPFFIVTQLPT
GVSGLLIAAVFAAAMSSLDSSMNSVATVVTTDFYRNWFPKDTTGKNTLGFARLITVIVGA
FGTGFALVMARLGLPSLWDQFNMIIGLFAGGLGGIFLIGMLSKKVNGKGALLGLLCSAVV
QVAVKYGSELSIHLYALTGLLSAMGMTYLCSFFFTDKLDVSGLTVHSLGNKVEKQENNKL
ENA