Protein Info for Echvi_4245 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 TIGR00229: PAS domain S-box protein" amino acids 4 to 115 (112 residues), 33.2 bits, see alignment E=2.5e-12 amino acids 291 to 411 (121 residues), 44.9 bits, see alignment E=6.1e-16 amino acids 719 to 824 (106 residues), 30.7 bits, see alignment E=1.4e-11 amino acids 854 to 951 (98 residues), 24.1 bits, see alignment E=1.6e-09 PF08448: PAS_4" amino acids 299 to 406 (108 residues), 28.8 bits, see alignment E=3.7e-10 amino acids 720 to 816 (97 residues), 26.3 bits, see alignment E=2.3e-09 PF13426: PAS_9" amino acids 305 to 404 (100 residues), 20.5 bits, see alignment E=1.4e-07 amino acids 724 to 816 (93 residues), 28.2 bits, see alignment E=5.6e-10 PF08447: PAS_3" amino acids 316 to 380 (65 residues), 26.7 bits, see alignment 1.6e-09 amino acids 462 to 530 (69 residues), 42.9 bits, see alignment 1.5e-14 amino acids 853 to 939 (87 residues), 52.4 bits, see alignment 1.6e-17 amino acids 1014 to 1066 (53 residues), 31.4 bits, see alignment 5.6e-11 PF13185: GAF_2" amino acids 570 to 702 (133 residues), 30.3 bits, see alignment E=1.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G6G4 at UniProt or InterPro

Protein Sequence (1158 amino acids)

>Echvi_4245 PAS domain S-box (Echinicola vietnamensis KMM 6221, DSM 17526)
MDDDIFEVSPIPMWVYDPSTLRFLAVNMEAVVQYGYTKEEFMEMTIAEIFPSSGAAMMHT
REKKQGPEAGDRTVRVDLHLEKGGRLRKVKAKGSKIRFKGKDAELVIAVDITHHEGLGER
VTGQREGLEFLEGINRQLIKASCADEAVTSVFSMLWEPWGLEKGYFLEVSDEAVGTGPTW
TVKTYDFPTRALSPGLGTAPFKLEHCVGPGAYGPGHPYRKELDQVLPEVTMDGLMMVVPI
LSEGNRSGYLVLLGKRHPYGKLLDLLLSNIGSSLSGLVEKFRSLGVWHLHERKFKALVER
SSELIAILNSEGRIDYFSPSCANLLGQNPGEFIGTFFLEHVHKSHREMVSEKLKKVRKKG
RVKLKAFRAFEQEDRPRWLEMNLSDMHGVAGVGGTVLNMVEITELKVEQENAKMINERYR
LAALASKDHIYDMDMKTGMVTRMGRALESLFGDDDPYRTQYPYGFWKDRIHPADREKVLW
LVDGFISSPYKENLSLSYRFRRADGSYAHVLDFCSAIRDQKGKVLRIVGSLRDISRAIHH
EEMKDLMFRVSYAMGQPGKLDASMKRGLVELLIHTGGELGEVWLRSKDGSRLYLNTTARR
KSRTQPFNAKKGTLNQVRKGEGLPGHVWKFSSVQIWEGLANNPLFLRSGDAREAGLDSGM
GIPIVHGTEVIGVFLVFTSGTAHAFHHHEKYLQEIGLQVGATVKNKLMEAELLQFMGISS
NLLAIVDPDGKVIRCNAAFARVLGKERRDVVGKGLDSFAVGEDSERLLSFLDPLDRSDFL
VVAMKNRAGDQKWVAWKKNFSKGEQVFYCMGQDISESKKAQYKLKNAYRRLDSAQRIAKL
GYWSRNWDETNSEWSEQTYRIFGVDPREFEPTYEKVLERFHPHDRHLMENVPLDRLKNSG
PVKFVHRILKGCGTTRWVAQTVNLVLDDEGNPTMIEGVVQDITEQRESEDKIKLNNERFS
LAMKATREMIWDIDHESGSILRSGALTHLVAYREKERFSINNSWLTNVVAGDAVWKSYML
VCGNRDKHYWQMEYRVRNKKGELLYVKDRCYIIRDKEGRPTRAVGAIEDVSETRKHMDII
AEQNRKLREIAWKQSHLVRAPLSNIMLLTSLLQAGCPVDREILSNLSIAAGNLDAIVHQI
NQEVQAVEKYLSETFYKN