Protein Info for Echvi_4242 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: DNA repair proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 PF04002: RadC" amino acids 33 to 152 (120 residues), 120 bits, see alignment E=2.9e-39

Best Hits

KEGG orthology group: None (inferred from 51% identity to fjo:Fjoh_4387)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G541 at UniProt or InterPro

Protein Sequence (154 amino acids)

>Echvi_4242 DNA repair proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MDTNNTVLSHVAEITLSYRPNSKMSDKPQVVSSQGAAKVLRANWDASKLEFIEEFKVILL
NRANRVLGIVNASSGGTCGTVVDLKVIFAAAMKASASCMILAHNHPSGTLRPSEQDTQLT
ERMAKAGKLLDLPVMDHIILTAEGYYSFADMGGL