Protein Info for Echvi_4148 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Copper chaperone

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 56 to 73 (18 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details PF02411: MerT" amino acids 19 to 123 (105 residues), 55.8 bits, see alignment E=4.8e-19 TIGR00003: copper ion binding protein" amino acids 145 to 207 (63 residues), 42.6 bits, see alignment E=2.8e-15 amino acids 230 to 293 (64 residues), 63.2 bits, see alignment E=1e-21 PF00403: HMA" amino acids 146 to 206 (61 residues), 58.4 bits, see alignment E=7.4e-20 amino acids 232 to 292 (61 residues), 57.6 bits, see alignment E=1.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G298 at UniProt or InterPro

Protein Sequence (300 amino acids)

>Echvi_4148 Copper chaperone (Echinicola vietnamensis KMM 6221, DSM 17526)
MNTSNQHSKQADFSTKSASAGLLAAIVASLCCITPVISFLAGISGIASTLSWMEPFRPYL
IMLTIGVLAFAWYQKLRPRTAEEITCACEDDQKPSFWQSKKFLGIVTVFATLTLAFPSYS
HIFYPNSTSSGVVADQDQTQIKLADFKIKGMTCTGCEEHVKHAVSGLNGVLETTASHKNA
NAQVKYNASLVDVNKIIEAINSTGYTVTESKVSDWNAENALFQSTTFNTIKLSVKGMTCS
GCESHITHAVGELDGVEVVKASYEKGSTIVKYDPSQVRKDKIVEAINKTGYKVVENKIQE