Protein Info for Echvi_4142 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 300 to 325 (26 residues), see Phobius details amino acids 337 to 357 (21 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 237 (225 residues), 122.4 bits, see alignment E=1.1e-39 amino acids 227 to 387 (161 residues), 35 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 66% identity to zpr:ZPR_4033)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4U2 at UniProt or InterPro

Protein Sequence (390 amino acids)

>Echvi_4142 Arabinose efflux permease (Echinicola vietnamensis KMM 6221, DSM 17526)
MKQIYRSKAFWLLALAASLIFFQAYMIAPLIPKLSEVFGVTEQYIGLVIPAYMITYGISI
LFYGVLSDRFGRMRIIRFSLLAFILLTALTALAQTSSQLIMLRLFTGLGASGVIPMALAL
VGDLYEPHERGKPLGLLFAAMEGGMALGSTAGVVLEPFIGWRMLFLGIAILGAIILWFIS
FQIDFKSQKPELNKPNVRQVFSKFFHLLSMSRGAKTYSSVFWNGIFHSGIYTWLGYYFSV
KYILGEIGIGLAILGYGVPGFLFGSSIGRAADRWGRFRLIIPGLGIAALATALLATNISV
ILAAIAVTVISLGYDLTQPLFAGIVTELGGKKYGGQAMGLNVFALFTGFGVGSLIFGEVL
SIGLENAFLIFAALQGLMMLFAIRMFKAEK