Protein Info for Echvi_4088 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Site-specific recombinases, DNA invertase Pin homologs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 PF00239: Resolvase" amino acids 6 to 154 (149 residues), 77.7 bits, see alignment E=1e-25 PF07508: Recombinase" amino acids 179 to 263 (85 residues), 45.1 bits, see alignment E=1.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G621 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Echvi_4088 Site-specific recombinases, DNA invertase Pin homologs (Echinicola vietnamensis KMM 6221, DSM 17526)
MSVADLYIRVSTDEQADKGYSQRNQEEVLKRYCDHHNIMVRKVVFEDHSAKTFNRPRWKE
LLTYLKKSRGRGVDKILFTKWDRFSRNAGDAYQMINTLRNLDIEPQANEQPLDLNIPENK
MMLAIYLAAPEVENDRRALNIFHGMRRALKEGRYLRKAPFGYINRMEGSKKFIAPKEPEA
SIVKWVFSTILKKRYPTENIWEMVKKKGLKISRSHFHRMVRNPLYCGKIYVPAFKDEEDQ
FVNGQHEPLITEGEFYRVQNILQDIGRDEYLPKVASDDRLPLRGFLICPKCGKVLTGSGS
TGRSRRYYYYHCLSKCGFREKASLFNDLMVSEMKRFTLKKDKVEIFGVILHEFFKYHFKD
EGEEHKKVAASLESLHEKLKRSRDLFVAGDLEADDYRDIKSECNQEITRLENQLAATKPE
RVSNHSKYVDRALERLSRLDLLYENGDIETKRELIGSIFPEKLCFSKTGYRTGRINALVG
CIYQINSNLNSKKNERKTKKSSNSHWVELQGVEPWSR