Protein Info for Echvi_4035 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Excinuclease ATPase subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1495 PF17755: UvrA_DNA-bind" amino acids 145 to 222 (78 residues), 53.1 bits, see alignment 2.4e-17 amino acids 889 to 997 (109 residues), 46.6 bits, see alignment 2.5e-15

Best Hits

KEGG orthology group: None (inferred from 70% identity to mtt:Ftrac_2319)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3X9 at UniProt or InterPro

Protein Sequence (1495 amino acids)

>Echvi_4035 Excinuclease ATPase subunit (Echinicola vietnamensis KMM 6221, DSM 17526)
MRITDAHQNNLKNVSLDLPENRLIVVTGLSGSGKSSLAMGVIANEGYRYFLESLPAYNQQ
HAQAIPTAEVEHISALPPVIKVEQSKRFQSINATFGTLSELTPLFRVLFARYAGEETMSK
SLFSFNHPKGACEHCRGIGEAEYIDIHKLVGDENKTLREGAITTTLPNGYIVYSQVTVEE
LNKVCAAHGFSVDVPWKDLSKEQQDVILYGSDRIKVFYGKHSLESRLRWEGFKAKPREEG
YYKGIIPIMSDILRLDRNVSILRFVSAKICPSCHGARIKAEHLRYRWKGLNFQEWMDLSL
QQLYDRLQAQSLSGGEKVLVDKLCTQLLDLIRLGMEHYQLSTSSMDISSGDGQRIKLIKQ
VNSSLQGILYVFDEPSIGLPAAYQQHLRHIFDRLILRGNTVMVVEHDLNFIQSADWVVEL
GPKAGIEGGEVIFNGSIDSFLTADPAKSPTLTAIQNQNEPSRKPAASQQVNAFQPQPQTL
SVVSRKTGKLLETITAFCDQQGLTFLTVTDQPIGKTPRSNPSTYTGLADGIRDLLAKTST
AKSLKLAKSAFSFNNKSGRCPNCEGAGVITLSMSVMGNINQVCPVCQGKRFKPDVLKVSW
QGKNIAEIYDLSIREAAEFFAEEKKLANILALMLQLGLGYIKLGQPSNTLSGGEAQRIKL
TKHFAKPSKKTVLLLEEPSIGLHQQNVQQLMDALNQLKKQTAGIVCFENHQLFQSQCDVW
VDNALAAQPTAIPLPPAQRRDIIAIHGARTHALKDISLEFPKEHLSVVTGISGSGKSSLV
IDTLHGFGLQEMTKQFSSYQQSRVGVNFQLEVDYIEGLTPSICITRKEKSFSERSDVAQQ
TDFDKTLRFAFSRKAQYTGLDWSASHFSNNHELGKCGICDGVGQELLPDLDKMVLDGGLS
INDGLFEHHKGLAYYGQASGQYMAVLGEVGKAYGFDLNTPFNELTPVQKDVIFKGVEGKT
WEATWKFRTKTREGTQQVNMKWSGLFKYLMDEYFLTRKNKYQPLKSLLSYNECSHCQGSG
LQPERLAVQIGGNSIHALKSMDFKKLDHWLKNVGATESIDQQLIGNVKANLANTLKRAKQ
LHIDHLQLNRKSATLSGGEQQRVTLIKQLNSPLKGITYLLDEPSAGLSADNIPDLVQLLR
ELVEKGNTVIVIEHNKEIMLAAEKLVEIGPQAGQEGGYITFHGSPAAFLERPDSHPFLKR
PAQPLTLATGNQTILLKDLARHTLVKKSLEVSVGGITAITGKSGIGKTTLVKDVLIPSIE
QEHPVNCAAITWPKAYSGAQYFEPKKLQAHNRTLLVDYLDLLKDICKVFSKETGRKARDF
SYKNKASQCPNCKGAGVVSTSLDVAANHIETCEVCHGQRYQANLLEYRVGGLHIAEVLAL
SVRELRSWLADHQVATSRETFIQQLDAIGLAHLRLDQAVKSLSSGEKQRLLLLHWLKSKT
RDQLLILDEPSTGLHYADIDLLFEILSSLSRDNDILVIDHNPYLLEKIGVGVVLA