Protein Info for Echvi_3955 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Exonuclease VII small subunit.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 68 TIGR01280: exodeoxyribonuclease VII, small subunit" amino acids 8 to 60 (53 residues), 45.6 bits, see alignment E=2.8e-16 PF02609: Exonuc_VII_S" amino acids 9 to 59 (51 residues), 49.7 bits, see alignment E=1.5e-17

Best Hits

Swiss-Prot: 33% identical to EX7S_CHLAB: Exodeoxyribonuclease 7 small subunit (xseB) from Chlamydia abortus (strain DSM 27085 / S26/3)

KEGG orthology group: K03602, exodeoxyribonuclease VII small subunit [EC: 3.1.11.6] (inferred from 42% identity to tye:THEYE_A1673)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.6

Use Curated BLAST to search for 3.1.11.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5P9 at UniProt or InterPro

Protein Sequence (68 amino acids)

>Echvi_3955 Exonuclease VII small subunit. (Echinicola vietnamensis KMM 6221, DSM 17526)
MSDQKNFSYDKAVARIEEIVRLLEQDDKSIDELSVLVKEASKLVKDCKSKLRMTEEDILK
AFGEDENQ