Protein Info for Echvi_3939 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 59% identity to fjo:Fjoh_4098)

Predicted SEED Role

"COG3866 Pectate lyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1R7 at UniProt or InterPro

Protein Sequence (827 amino acids)

>Echvi_3939 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MIKRKMTTLGKYFLTLAGVMHLGLMAMQGYAQSPTVKVDFDFGGRKLAEVNEPGYTSWIV
EEGQKAEATFSGVHFTISGEGLQSSWYKAGVQAPFYARLSNDGMVAEREIHMEIKGLPAG
KHTLLGFFNTFDNPENHSFSPIDVYVNGELQADDLIPSNRTESKAATATGYLEFEVAAGE
SVKIRMVNDPKADGDAAELVWNGFELNTPNIKQQAKTPFPEDGDEHVEAENGVTLTWKPA
KGSVKHQLYFGTSKAAVAAATPNSDLYQGELSSAAYQVSDLYSMDTYYWRVDEIDEKGAL
TKGNIWYFRPAQLAFRGAEGYGRYARGGRGGKVVTVTNLNDSGPGSLRAAVTNDIGPRTI
VFSVGGTIELKSRLVSNQRYVTIAGQTAPGKGIMIERAPLGITGDDGVARFLRVGIGAGR
TFDGMGLTGANYSIIDHCSIRWTIDESFSSRGAHHITLQKTLIAEALNVADHSKYEEGKM
HGYAATIGGDIGSFHHNLLAHNYGRNWSMGSGLDGNAYYKGKLDIRNNVVYNWGSRTTDG
GSHEVNFVNNYYKPGPGTKHFIALTIDHEGVGLGTQRGYFSGNVMPGYFDEDNQEEGRRE
RYHNGDYKKYEGFVDKPFFPSHVTTQPAREAYKIVLSDVGANQPVLDDHDQRIIQETLDS
TYTYKGSLSGIPGMPDTEQDVGGWEEYPEVHRSENWDSDLDGLPDWWEVAKGLNPESPSD
DFSDANQDADRDGFTQLDDYLDWMARPHYFLSKGELLELDLSTLFKGFEESPRFSVMDRS
EGQGFEISDGELTFKAKDAGFAAVKVKVKDQEGHTMTRMVNVFVKDN