Protein Info for Echvi_3919 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Domain of Unknown Function (DUF1080).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details PF06439: 3keto-disac_hyd" amino acids 44 to 230 (187 residues), 154.4 bits, see alignment E=1.9e-49

Best Hits

KEGG orthology group: None (inferred from 60% identity to ipa:Isop_2611)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1Q0 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Echvi_3919 Domain of Unknown Function (DUF1080). (Echinicola vietnamensis KMM 6221, DSM 17526)
MIQNVYFKKQKMRDYLDFNKPPFLAVLTCCLCFVLISFTPKKAFVSLFNGKDLDGWVGNK
KAYSVEEGLLVINPENGGGGNLYTEKEYSDFHLKFEFLLTPGANNGLGIRAPLEGDAAYA
GMELQILDNSAEKYADLHEYQYHGSVYGVIPAKRGFLNPVGKWNSEEVTIKGKKIKVILN
GHTILKGNIAKASAGGTLDGKEHPGLTRDKGHIGFLGHGSVVKFRNIEIKEL