Protein Info for Echvi_3904 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF18731: HEPN_Swt1" amino acids 66 to 191 (126 residues), 55.2 bits, see alignment E=4.2e-19

Best Hits

KEGG orthology group: None (inferred from 64% identity to dar:Daro_3642)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5K4 at UniProt or InterPro

Protein Sequence (193 amino acids)

>Echvi_3904 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MSNLDKIKLFAMANSLTEHQLDKIEKDFDIDLERNPKQEVQKKEYYLQFDSEFRREAKSM
AEHYEVFYCLEKSIRALILQLMEERYGVNWWVDQVAEPIKVNVEKNIKRDEDSGFTIRSD
EKIDYTTFGELSQIVTGNWEAFEELFKRGKRSFQKIMTNLNQLRGPIAHCSPLAEDEVVR
LELTVKDWFRLME