Protein Info for Echvi_3837 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: chromosome segregation protein SMC, common bacterial type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1184 PF13175: AAA_15" amino acids 1 to 311 (311 residues), 52.5 bits, see alignment E=1.6e-17 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1175 (1174 residues), 1069.3 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1168 (1166 residues), 188.8 bits, see alignment E=2.3e-59 PF13476: AAA_23" amino acids 5 to 214 (210 residues), 85.1 bits, see alignment E=2.8e-27 PF06470: SMC_hinge" amino acids 524 to 624 (101 residues), 60.3 bits, see alignment E=6.2e-20

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 65% identity to mtt:Ftrac_0067)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1I7 at UniProt or InterPro

Protein Sequence (1184 amino acids)

>Echvi_3837 chromosome segregation protein SMC, common bacterial type (Echinicola vietnamensis KMM 6221, DSM 17526)
MQLTKLEIKGFKSFGDKVTIHFDKGITGIVGPNGCGKSNVVDAIRWVLGEQKTRMLRSDK
MENVIFNGTKNRKPTNMAEVSLTFENTKNLLPTEYTHVTITRRYYRSGDSEYLLNGIACR
LKDINNLFMDTGIQSNSYAIIELKMIDELLNDKNNSRRDLFEEAAGISKFKTRKKETLKK
LDDTDADLDRVEDLLYEIEKNLKSLEKQAKQAAKYFEIKKSYKASSIALAKKSVKTHTDN
LINTNEKITAENDRKLQINNEITTKEAELEKFKSDLIHKEKLLSTRQKTLNEHVNKIRQF
ESEKKIKNERLRFLEDRALKLREQIDQDRKSNDRAGFSIRSLEQEKEVAEKLLAEKELTV
QGLKEEYEEQKSAHAIQQERQKVLSKDYASRKDTIYQLSKELEIKQIQLSSLKQELEKTA
SDDDSQEANLASFEERMVLLKDELDAKTDQLQRLKSQEEDQNQKIEDANRTIELIREEVT
QLGRKLDAKQNEFNLTKSLVENLEGFPEAIKFLKKKSSWGKDTPLLSDILTTSENYRVAI
ENYLESYMNYYVVETEAQAIAAVNLLSDAARGKANFFVLEHFERFRPAQNKLFANAIAAT
EIIEFDEKYSKLISYILDDVYIVRGEITDIPQDNDAIFITESGKFTKRKFSISGGSVGLF
EGKRIGRAKNLEKLEVEIKELHKKVSAARSNLDKNVSDLMKLKEVSYKKDIENLQSEISE
VNQQYISIKTKKEQLAEMLSTNANKREDILEKIESLSAEVDEIGPKLQEAKDGFDGMEEE
LEIMNDHLLQEEESLAVRSSNYNQENIQYHQHLNKVNSLEQEISFKKTAFENSKDRIEKS
QGELSSIDQEIKGLLDNNEIKDDELIELYTEKEAIETGVTEAEKNYYASRGDIDEMEKGI
RAISKQKEGIDTIIMELQNALNEIKLKLSSMKERLSVEFEIDLDALMEEDPEVDEAYQEK
STEQIREEVSKAKQKLEKIGPINPMAMEAYDEIKERHVFITSQKEDLTKAKNSLMDTIKE
IDTVAKETFLEAFEQIKTNFIKVFRSLFTAEDDCDLKLTDPDNPLESTIEIMAKPKGKRP
LTINQLSGGEKTLTATSLLFSIYLLKPAPFCIFDEVDAPLDDANIDKFNQIIQKFSHESQ
FIIVTHNKRTMASTDIIYGITMIEAGVSRVVPVDLRELEDIIED