Protein Info for Echvi_3793 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Lipid A core - O-antigen ligase and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 63 to 81 (19 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 228 to 244 (17 residues), see Phobius details amino acids 249 to 265 (17 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 324 to 338 (15 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details amino acids 429 to 446 (18 residues), see Phobius details PF04932: Wzy_C" amino acids 233 to 379 (147 residues), 43.5 bits, see alignment E=1.5e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5B1 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Echvi_3793 Lipid A core - O-antigen ligase and related enzymes (Echinicola vietnamensis KMM 6221, DSM 17526)
MALIYSLGKWGYLNWQGKRSNHMLISFFVLMLAFDFGTSFHTFLTKTNYEGTMVDRLGVF
GNSLWISLSTFVIPIGFFLGYQRFAVLRFKEYKWEIVVLVMSMIALFNPMNPYPKSVLIF
LCYAGQIFLSVNYIKGNFTQGEALKGVFDGLMVITVLQTVLVIMYPVLGIEAALTFFKGE
DMIDYALKREGYTSAVGIFGHPGTLALFSLITAIFFLSSYLNGFKKSLSLYCFLANVFII
LLTFSRTTYVTSAIIIGIVLVSFYSKKSFFSVKNLVLAAFGFAALIGVLFLTPLSELFLA
SDFENQIEVRFSSWFMGYDIWSRAKLLGVGINAHVYYMGHFIRVTQDLAVVEFITTNPIH
NIHLIVLAETGIIGMMLWLVFFGSKVSSHTKTLKTSNIAVNIFSLATVGIMISIFVYGFF
GWAPLKREMITLTFLIGQVHVFKAFHSRSSHHYQVKPLRFTQQLVN