Protein Info for Echvi_3715 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted Na+-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 45 to 61 (17 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 291 to 292 (2 residues), see Phobius details amino acids 295 to 319 (25 residues), see Phobius details PF13593: SBF_like" amino acids 14 to 324 (311 residues), 325.5 bits, see alignment E=3.7e-101 PF01758: SBF" amino acids 50 to 223 (174 residues), 33 bits, see alignment E=4.9e-12

Best Hits

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 50% identity to sli:Slin_1899)

Predicted SEED Role

"Sodium/bile acid symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G317 at UniProt or InterPro

Protein Sequence (331 amino acids)

>Echvi_3715 Predicted Na+-dependent transporter (Echinicola vietnamensis KMM 6221, DSM 17526)
MSQLKNILTKAGLNGFFLALIGTIVLANIFPELGAEDSIIPFKEITHYGVSVIFFFYGVK
MDPVKLKAGLANWRLHLLIQSTTFLVFPAVVMAVKTMVGAGDDPLWLGALYLSALPSTVS
ASVVMVSIAGGNIPAAIFNASISSMVGIFITPVWMELFLEGSEMTFDLLDTFWQLSLQVL
FPVVAGFLLHRSLGPWVSRHSTALKNLDQAIILMIVFSAFSAAVGRGMFEGRSWSFLIGL
GGLMLLLFLVIVALMYGMGRLLGFDRADQITVLFCGSKKSLIQGAAMGKVLFPDPVTFGV
ILLPLMLYHALQLVTGSVIAQQLAERNKEKA