Protein Info for Echvi_3684 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 962 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 34 to 108 (75 residues), 40 bits, see alignment 8.5e-14 PF13715: CarbopepD_reg_2" amino acids 35 to 120 (86 residues), 79.4 bits, see alignment E=3.4e-26 PF07715: Plug" amino acids 131 to 238 (108 residues), 37.9 bits, see alignment E=4.5e-13 PF00593: TonB_dep_Rec_b-barrel" amino acids 407 to 932 (526 residues), 94 bits, see alignment E=3.8e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3K5 at UniProt or InterPro

Protein Sequence (962 amino acids)

>Echvi_3684 Outer membrane receptor proteins, mostly Fe transport (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKALPKRKATQVFLFFALFLSGISLALAQETTTINGTVTDAGTAETLIGVNILVKGKVV
GTVTDLDGNFSLEVQQAPPLTLVVSMVGYTSQEVLITTSNATDLEINLEEQTLLGQEVVV
SASRVEESILTSPVSIEQMDILSIKETASDSYYKAIANLKGVDVTSSSINFQILNARGFN
STGNTRFVQLTDGMDTQAPALNFPISNLNGPSELDVETVEFIPGASSALYGPNAFNGILL
VNSKNPFDYQGLSAYYKQGVNHINGREGEPQSAQPMYEGAIRYAKAFNNKWAFKLNGSFM
RAEDWYGTDMSDLNARSQGDLPFNPGANRVHIFGDEVANNIGLLRNVGAIQQQAAALGID
GYLPSIPDQIVSRTGYEEPYLVDYGAAAYKFNGALHYRINDFLELSYTLNYGSGTSVYTG
AQRYSLSDFEISQHKLELTGDNFFLRGYTTRENSGGSFIADLTGVRINDTWKDNSSWFGE
YTLAYMGALAQQGVAPGASGTVDQQAAAHQAARGVADQGRIMPGTTEFNNISEQVKSDFI
PEGSLFNDRSRMYMAEGQYNFKNEIDFMDLQAGASYRLYELRSNGTIFADVEGNDITISE
YGAFAQGAKKVLNDKLKLMASVRYDKNENFKGQVNPRFAAVFSQGNSNIRLSYQTGFRMP
TTQGQHIDLNVVSARLLGGLPYYREKYRIFENAFSLASVNNYIAKVGEGYSPAAPEATAE
LVAVNDLPDLRPEQVKSFEIGYKGLLADNRLLIDAAYYYNIYNDFITQTAVRKAPGPVYP
VPANGDQAAINAVNAPALLTPVTTPGQENTFQTYTNLVGSSVKANGAAIGITYNLPKNYT
FSGNYNYNKLLTTIEEGFLSDFNTPEHKFNLIFSNRKLTERLGFNVTYRYQTAFRWESSF
AAGEVPQVGTVDAQVSYKVKDWKSIIKLGGSNVFNERYFLNYGGPTIGAIYYVSITFDEL
LN