Protein Info for Echvi_3641 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 107 PF01906: YbjQ_1" amino acids 1 to 103 (103 residues), 131.7 bits, see alignment E=7.2e-43

Best Hits

Swiss-Prot: 72% identical to Y226_BACFN: UPF0145 protein BF0226 (BF0226) from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)

KEGG orthology group: None (inferred from 72% identity to bfr:BF0270)

Predicted SEED Role

"PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4B1 at UniProt or InterPro

Protein Sequence (107 amino acids)

>Echvi_3641 Uncharacterized conserved protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MITTTTPSVEGHEIKTYFGIVSGETIIGANVFRDFFASITDIVGGRSGTYEKVLKEAKST
SLMEMEMQAKAMGGNAVVGVDLDYETIRDGMLMVTASGTAVLVEPKQ