Protein Info for Echvi_3624 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein/protective antigen OMA87

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01103: Omp85" amino acids 202 to 361 (160 residues), 40.7 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 63% identity to mtt:Ftrac_3561)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0V9 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Echvi_3624 Outer membrane protein/protective antigen OMA87 (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRNILILFLVWSFNAETVEAQETESRSGAKSGQKNGFIHRYINGLINDTSDVAQPRFLF
YPTLAYAPETSWEIGLSSLYVFYANRDTTNRLSEINGFTFVTLEGQYGLWFDHAIYTDKE
DWFFLGKLRFQRFPMYYYGIGPSTPSDYLAVVDSRQILIKERVLRKLKKDFYLGMELDFN
NFGSVAFQPREEGTEITYPVGAEGSTNVGLGLGLVYDNRHNVLNVRDGLFSELAYIQYAP
FWAGKYEFATIITDNRIYRPISKNNVLAAQLFGQFNTGDVPFNMMSALGGESMMRGYYYG
RYRDNNYLTTQVELRFLPIPLGFSKRFGAAVFGGTGTVFDDFSNLSLDKVVWSAGAGLRF
LLFPSKDIYTRIDAAFTKEGHGFYIYIGEAF