Protein Info for Echvi_3620 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: heavy metal efflux pump (cobalt-zinc-cadmium)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1451 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 341 to 360 (20 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 446 to 466 (21 residues), see Phobius details amino acids 478 to 504 (27 residues), see Phobius details amino acids 539 to 558 (20 residues), see Phobius details amino acids 875 to 894 (20 residues), see Phobius details amino acids 901 to 920 (20 residues), see Phobius details amino acids 926 to 950 (25 residues), see Phobius details amino acids 974 to 993 (20 residues), see Phobius details amino acids 1005 to 1028 (24 residues), see Phobius details amino acids 1040 to 1058 (19 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1039 (1039 residues), 1221.8 bits, see alignment E=0 PF00873: ACR_tran" amino acids 6 to 1030 (1025 residues), 954.9 bits, see alignment E=2.6e-291

Best Hits

KEGG orthology group: None (inferred from 67% identity to gfo:GFO_0029)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G491 at UniProt or InterPro

Protein Sequence (1451 amino acids)

>Echvi_3620 heavy metal efflux pump (cobalt-zinc-cadmium) (Echinicola vietnamensis KMM 6221, DSM 17526)
MINRLITFSIKNKLIIGLFTLALIGLGVWSMLQVPIDAVPDITNNQVQVITQAPNLGTED
IEQFVTYPVELAMANLPGVKEVRSVSRFGLSVVTIVFEDDQGTYLPRQLVAEKLNQVRDE
IPDGFGKPSMGPISTGLGEIYQYTLEVDSAFRDHYTLTQLRTIQDWIVKRQMAMVPGVVE
VNAFGGKIKQYEVAVDPDELSAIGISISDIYAALAKNNQNTGGAYIERNHHANFIRGEGL
VRSLDDIRNITVANQNGIPLKIKDVAEVRFGHAVRYGAFTKNGKGEAVGGMILMLKGANS
EKVITAVKERINQIQQSLPEGVRIKPFLDRSDLVKETTATVSTNLLEGGLIVVFVLVLLL
GNWRGGLIVASTIPLSLLFAFIMMNAFGVWANLMSLGAIDFGIIVDGAVIIVESSVYYLH
QKIPTTKLMTAKDRDKQAALASKKMMNAAFFGQLIILIVFLPILALEGVEGKMFRPMALT
FIFAMLGAMILCLTYVPMMSAAFIRVAKPTRKSWGDKVIMWLESKYVPLLEQALKKGKWI
VGMAIVLFGTTCFLFKNMGGEFIPQLDEGDIAFHIMLAPGSSLSESVATSTRVEKIILEN
FPEVEQVMSRFGVADVPTDPMPMDIGDCFVILKPQDEWVSASSKEELIEKIKAKISVIPG
VNYEFTQPIEMRFNELLTGVREDIAIKLFGEDLDILAAKANSIGQLIQGIDGVADLRVEA
TTGLPQMTIRYDREKLAQYDLDVSALNTIVQTAFAGKSAGAVFEGEKRFDLVIRQDASSR
KSIEDIKNLYVNISEDYQIPLKEVAEISYKPGPMQISRDNTNRRTYVGINVRGRDVASLV
KEIQDTLEDSLELPPGYYIRYGGAFENFERASKRLQLVVPVALASIFILIFFALNSLKQT
LMIYMAIPLAAVGGIGALWLRDMPFSISAGVGFIVLFGVAVLNGLVLINGLNELKEAGHL
SLLERIKTGTKRRIRPILLTAVTDILGFLPMAISQSAGAEVQRPLATVVIGGLLTATLLT
LFLIPILYQWLESSQNNMKAPKAGLILMVLWGAFLLPTRSDAQNMAQSQPITLDEAIARA
HERYPLLEHAQLEIEKQTVLKKKAWDFGNTQVYTGGEEVKDDLGVYTTIGIQQQQMDIFG
ISAKSTYQQEKVSWAEASKELSAAALTREVSIAFVEAYLAKQQYALLDKMDSLYGHFERA
ARIRYETQTTSKLEWLSAQNKAKQVAIQKEQSHKDYLISLKKFNLWLVSDTLFTVQANDP
SNLLTLGQDINDMVEHPQVLLAKRDQAVAAQGVKVAKTGYLPKLYAQYGLQEIQGISGFT
TFQLGISIPLAFHQNQADVRSAKLEVKQANQKLLQTKMELNVAMDAAREQFLKWKSAVEF
YESEALPLAKEQERGALLAYQEGAIDYVTFLQNINDALTIEQQAQDSLKAYLLSKITLQY
YTHSTPKQDEY