Protein Info for Echvi_3550 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 86 to 100 (15 residues), see Phobius details PF00534: Glycos_transf_1" amino acids 191 to 341 (151 residues), 31.6 bits, see alignment E=1.2e-11 PF13692: Glyco_trans_1_4" amino acids 194 to 315 (122 residues), 33.2 bits, see alignment E=6.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G426 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Echvi_3550 Glycosyltransferase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKTKIVIASVLKPLTDSRAFYKLAISLRETNKYHINIIGFLEKNPPNSENIEFTSIYRK
SRLHPARVLVPFNFFSKLLRIRPQLVIVTTYELLVPAILLKPFLRFKVIYDLQENYAKNI
IHNQTMPSLFRKTAAAYVRFVENSCHPSIDHYFMAERSYPQEFPHITNYTILENKYSGEV
HSTTPFSLSNDRLRLTMTGTLTEVYGIEDGIHWFKVIHKHFPSFRLHLIGHFPIADFRKR
IEALGKDCPGIKLELHDRPVAQSTIYEALAATDILLLPYRQLPSIMHKFPTKIYEALAKG
IPVITTENPQWKAMLASYPAGITLDFTQPENSLTTLRDFLTWGLFRNSVGPEIRWESEQP
KLLNIVEKLMGT