Protein Info for Echvi_3548 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type metal ion transport system, periplasmic component/surface adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01297: ZnuA" amino acids 30 to 300 (271 residues), 234.3 bits, see alignment E=8.9e-74

Best Hits

Swiss-Prot: 43% identical to MNTA_BACSU: Manganese-binding lipoprotein MntA (mntA) from Bacillus subtilis (strain 168)

KEGG orthology group: K11707, manganese/zinc/iron transport system substrate-binding protein (inferred from 44% identity to mtt:Ftrac_0691)

Predicted SEED Role

"Manganese ABC transporter, periplasmic-binding protein SitA" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0P1 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Echvi_3548 ABC-type metal ion transport system, periplasmic component/surface adhesin (Echinicola vietnamensis KMM 6221, DSM 17526)
MRTRIWYLVSLCLLGACKIDKEEDKAKFHITATTNIMADGVRALVGDSAVVTPIMAVGVD
PHLYKASQRDLDLLFEADLVVYHGLHLEGKMVEVLHKFSRTHPAVDVGATLPPTLLIASP
DYANTVDPHIWFDVHLWRTAMRNLKDEIIKRKPGWESYINANWEVYQAQLDELDQYTAKK
VKSITNQGQVLITAHDAFSYFGKAYNIEVKGLQGLSTLSEPGLNDVSSLVSFIIEKDIKA
IFIEQSISPRAIKAVVEGCRRKGHQVTLAGPLYTDSLGAPDGPAGTYIGMVKTNVDEIVN
NLKHHDTTNRASGS