Protein Info for Echvi_3524 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14322: SusD-like_3" amino acids 21 to 214 (194 residues), 73.3 bits, see alignment E=3.3e-24 PF07980: SusD_RagB" amino acids 286 to 574 (289 residues), 131.9 bits, see alignment E=4e-42

Best Hits

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4I5 at UniProt or InterPro

Protein Sequence (575 amino acids)

>Echvi_3524 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKNIKYSLILALFLFSACDDEFLDKYPLDSVTHETYWETESQLRAALYPCYEGLDYELLI
YPNVFGGDVVWGDLNSGLAKIPGGRHTALDGFPFTSFWSWLYAPIFTCNNFLDHYDKANV
DQDTKDVYAAEVKVIRALQYFWLTSYWGDVPLVDKVINASEAYMPRTPREEVVQFIMDDL
DWAASKLGEEIPSGDDVGRINRWGALAVKARVALQNEMWEVAANTAKEIMDNSPYALYSN
YGDMYKLAGNAETNPANREAIIYSLFVEDLRTNNLSNYTCTPVDYIRLNASKRLVDAFLC
TDGKPAKAGLEYYGQSIATSELYNYPEEHYADYFENRDPRLKMTVYSPGDEWPGGDDGDP
DTDTANEIYQLPRFAVLQNNNRLGANGLTGFYLKKYNSIELAGLYNRDHNNINVIRYPEI
LLIYAEALFNIQGGTLTQAQIDMTVNQLRERVNMHPMNLDELNAWGLDLETELHRERRVE
MSMDGMRYFDVLRWEEGEIHLGKAMVGPSLEVCMNDLGANPYPDNGTDEFGDIIYEKSVA
EGGLDHFDPSKHYLWPVPYAERIKNPDLGQNPGWE