Protein Info for Echvi_3500 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 51 to 1045 (995 residues), 861 bits, see alignment E=1.5e-262 PF13715: CarbopepD_reg_2" amino acids 52 to 135 (84 residues), 78.3 bits, see alignment E=5.5e-26 PF13620: CarboxypepD_reg" amino acids 52 to 121 (70 residues), 44.4 bits, see alignment 2.6e-15 PF07715: Plug" amino acids 143 to 260 (118 residues), 61.6 bits, see alignment E=1.4e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 236 to 266 (31 residues), 63.4 bits, see alignment (E = 1.2e-21)

Best Hits

KEGG orthology group: None (inferred from 64% identity to lby:Lbys_0006)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3X8 at UniProt or InterPro

Protein Sequence (1045 amino acids)

>Echvi_3500 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKHIFPKKPWKWTTLDHKVQMQWKVPLSIMYAVIILLSIHVPQAVLAQTAEISGTVISGE
DQQPIPGATVLVKGSGTGTVTDLDGNFTVKVNEPATAVLSISFVGYVTQEISVNNQSTIQ
VELDPDVSQLDEVVVVGYGETKRKDLTGSVVSMDSKNIQEANKVNAFQALQGQVAGVNIQ
AADNKPGGGFNVRIRGSNTINANETVEQGGFNPGQNPLFVVDGIFVNDISFLNPADIERM
DVLKDASATAIYGSRGSNGVVIIETKKGSEGKMTVQYDNYIGVKEAYNLPDMLQGEEFVQ
YFRDAVVGNFYASGDFSVNAGDVNLSDYMRPNELENVANGDYVNWIDLIQHNGMQQNHTL
SLNGGNDKTVYGIGVAYTQDEGTFEGEDYERYTIRGNLSSKLSDLFSVAFNNYASFAIRN
EGSREGLRSAYRLRPTGTPFDENGDPQFFPLQGETFITNPLFEPDNITRETRTLNYLSNL
SLSFTPVENLKISSNFSPNIEFSRYGEYRGRYAKSTSGQQGNTRAEVNNRNRISYTWDNI
VNYNLEFGSDHRLNTTFVYSLFMDRYENYLMQRRNYGTDEFLFYNIDAGSDLRTADGGFS
KQTLESYTARVNYAFKDKYLLTLTGRYDGSSILAEQNKWAFFPSAAFAWRIIDEGFMQDQ
NFIADLKLRLSYGETGNNGTGGGLVPLGSLSLIGNNFTNIGDQVTQTAYVTNLANQDLTW
EKTKEFNFGLDFGFFNNRLYGSLDIYHRKNTGIIFFRPISTVSGFSGVFQNVGEAENKGI
ELGLNSVNIHTGDFKWTTSLNFAKNNNKITKLYGDLDQILFGVQAGSYVHKVGEPVGSIY
SYVFDGIWQLDEADEAQSYGQQPGQVRVRDLNDDGSIDADDRTVIGSNMPKWSGGIANTF
NYKNWDFTFFVRTNQGAVSASYFHISHSGGFDSTPARFNSLQTNYWTPDNPSNEWFQPSN
NGPFSEPLTYHDVSFVKVGYITLGYNFKQPVLDALKIQNLRLYFTAQNPFTFTNYEGWDP
ENAARNSWGSAYMSRIFMGGINVKF