Protein Info for Echvi_3493 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Fibrobacter succinogenes major domain (Fib_succ_major).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR02145: fibrobacter succinogenes major paralogous domain" amino acids 249 to 472 (224 residues), 71 bits, see alignment E=1e-23 PF09603: Fib_succ_major" amino acids 256 to 471 (216 residues), 180.7 bits, see alignment E=1.7e-57

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0J0 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Echvi_3493 Fibrobacter succinogenes major domain (Fib_succ_major). (Echinicola vietnamensis KMM 6221, DSM 17526)
MKNYLSLFTLCIFLSTSCVQESMEEPKMGTVSFSKVTFEHFGNVSPYGRTAAESEWKHIF
AESATLLITNKATGQEYTLEYNPNDFTEAYQIQLPFGEYSVFSEVEGGDFETFLPFTISG
EFTLDDTSLDISLQGSTEYGLVTVKKEFVQSANLDGTHELVVCEHDMILYLYVKAAQAPT
LTIYENFNGQALQKELAISPYNHYHHYLKLTESQGTVNFIELAIGPFEYHEEYFEIGGEE
EITSVTDADGNVYEVVKIGNQYWMAENLRAVTYCDGTPLETFMPPGITMPYGFNEQPDYA
FIKADRYTSENNYYYNQEVARNEKNICPCNWHVSTDEDWMELERYLGIPESDLYSRRRGY
DQEAADQLMALDWPDIYGEVPPELNITNSTGFTAYPNGRWIYDIDETGEGLRWNAFSFAA
WWWSPKEDSLKMRSIQSEGFSVSPEEISSIYRMGSADGARDGHVLSIRCVKD