Protein Info for Echvi_3491 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: NHL repeat./Predicted periplasmic protein (DUF2233).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 655 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF09992: NAGPA" amino acids 138 to 329 (192 residues), 127.6 bits, see alignment E=1.5e-40 PF01436: NHL" amino acids 356 to 380 (25 residues), 24.2 bits, see alignment (E = 6.4e-09) amino acids 410 to 436 (27 residues), 35.3 bits, see alignment (E = 2e-12) amino acids 463 to 488 (26 residues), 32.6 bits, see alignment (E = 1.4e-11) amino acids 517 to 543 (27 residues), 28.6 bits, see alignment (E = 2.5e-10)

Best Hits

KEGG orthology group: None (inferred from 50% identity to phe:Phep_1358)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2E6 at UniProt or InterPro

Protein Sequence (655 amino acids)

>Echvi_3491 NHL repeat./Predicted periplasmic protein (DUF2233). (Echinicola vietnamensis KMM 6221, DSM 17526)
MRRIYSTIKLIFLIGIPLVSMLSCSTFDDPEGLIAEKEVPSLSTQSTCQYNITQILKENT
NLIDSVVDESQRMVATGVVETIIRYVDPSGDPMRVFFLEVDLNIPGLNMEVGTPFNQHGY
GLQTIKNQAEEVNATHHQVIAAINGDFIDNQYETLPRPPHGIVHKNGVVIKDVYTHTAEK
PQQGLTFFGLDRNKEPIIGGRDDYQAASGELFNATGGGVFLVKNGQIQSQTIHSIHPRTG
IGYRTDGTVIMFVVDGRDSKYNTGSTGMKYTEMASVFYALGAENAINLDGGGSSTFVTQT
YGINELLVRNLPGNPNNSHRELVNSWLVYRCLYETETIAGTGIAGFQNGSSSTAKFDNPE
GIAIDQQGNIFVADRDNNVIRKISSSGDVSTFAGTGIAGFTDGVAGVAKFNSPWKVAVDN
QGNVIVADRGNHSIRKITPNGTVSTLAGTTNGYQDGSGNQAKFDQPTDVAVLPNGNIVIA
DNRNHCIRMIDSSVQVSTIAGTGNGGYVDGAGSQAQFYYPSGIDTDPNGNLFVADRKNHA
IRKIDSYHNVSTVAGGNGEGIQNGGIAVAKFDDPYGVAVGQNGKVLVADLDNNVIREING
DYVSTIIGSNGEGYIDGPSTASKMNSPTDVLVNGDEIIFADYGNHLVRKVVKDEE