Protein Info for Echvi_3446 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Long-chain fatty acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2A6 at UniProt or InterPro

Protein Sequence (478 amino acids)

>Echvi_3446 Long-chain fatty acid transport protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKSFVLVSLLLILFCRESSGQSNHYWTRNYGSESMLLNGSVIGGVTDLGAVYYNPARLAI
TDNPAFIISADVYELNSYKIEDAIGNRKDLTQSSFGGAPSLAAGTIDMKETSRSTFAYAI
LLRYNNNFGFSYRDEFSQNILPNVPEDELFEGELNVTNNLKDHWFGGSWAYKLKENFSIG
VSLFGSRAEASKGNMFDMTALDVNNDISKYDYNRAYSFQSYGVLAKLGAAYSTDKMDFGM
TLTTPRAHLFGKGNYQYHLYFAAPDESGIADIYANSYQSDLEINLKSPLSIGLGASYHIA
ENKVIHFSGEYFGKINPYKILEASPHQMQSKSDSTIYFTLMDGRKAIANAGIGVEWFLSQ
KVSFYGGFSTDFNAAATNSVSFVTQEPTATNLSFDANFYHLAGGVLLTFKGAEFTLGATH
TSGKTNFDKPINFPSGNDPSVVDIASDGRMLWDRWQFIVSVSVPFLKDYVDKLEDKLF