Protein Info for Echvi_3439 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Membrane proteins related to metalloendopeptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF01551: Peptidase_M23" amino acids 171 to 265 (95 residues), 112.7 bits, see alignment E=7.9e-37 PF01476: LysM" amino acids 300 to 342 (43 residues), 48.7 bits, see alignment 5.9e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2A0 at UniProt or InterPro

Protein Sequence (343 amino acids)

>Echvi_3439 Membrane proteins related to metalloendopeptidases (Echinicola vietnamensis KMM 6221, DSM 17526)
MGIRIIILLVTLNLCVGLSEACAQIFPKIIKKDKAPAVKVPDARNLQTFDVEEYLYNLQK
GTDSLIYQDRVDLRRRLSTVSEDTLSLIWAPTHQLAQVSEKIQIDSIWVTAYEYYSSWDS
QRIDSYGFDPKGFKDTVMIKLYDPFHGTNWSSPLKETKINSEFGFRRYRWHHGTDLDLNR
GDPVYSVFDGIVRMRSYDRYGYGYYVVVRHKNGLETLYGHLSKYNVAVGQEVKAGEVIGY
GGSTGRSTGPHLHFEVRYQGLSINPTELFDFSVGRLKNSVYAVTAGSFEHIIKMRQAVYH
RVRSGENLSVIANRYGTSVRHITRLNNISSKSILRVGQRLRIR