Protein Info for Echvi_3423 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1207 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 120 to 1207 (1088 residues), 643.2 bits, see alignment E=9.7e-197 PF13715: CarbopepD_reg_2" amino acids 121 to 202 (82 residues), 61.4 bits, see alignment 1.4e-20 PF13620: CarboxypepD_reg" amino acids 121 to 191 (71 residues), 47.2 bits, see alignment 4.8e-16 PF07715: Plug" amino acids 212 to 335 (124 residues), 73.1 bits, see alignment E=5.2e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 311 to 341 (31 residues), 61.2 bits, see alignment (E = 6.3e-21) PF00593: TonB_dep_Rec" amino acids 557 to 994 (438 residues), 73.9 bits, see alignment E=4.9e-24

Best Hits

KEGG orthology group: None (inferred from 60% identity to dfe:Dfer_3220)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2W1 at UniProt or InterPro

Protein Sequence (1207 amino acids)

>Echvi_3423 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKIKITNGNLWTYWLQRISLFAMAILLGAAAYPAEDQQIRLPQSNVTVRQFIFSVEEQTD
YKFLYDETIAPALNGEVQLSERGQLNELLNMLNTKSQLEFRKAGQTILIRPKSKEARRAK
IDGVVFDEEGNPLAGATVKIKGATTGTITDLDGKFSLEVPGSETVLVISYVGFHSKEMAV
GNQTNLRITLQGAYQNLEGAVVTALGIRREERSLGYAVSEVSGKDFERGGQDNMLKSLAG
RVPGVSINSTGGPGSSVSMIIRGITSLSGDNQPLFVVDGVPVINSLNNISQIGNDNKVDY
GNAMSDINPEDIESVSVLKGPSAAALYGSRAGNGVVLITTKSGKNVDKVTVSVSSNTLVE
VPYKYLPMHSRFATGVRPYTPDNNPYPGGVLTIEEGSSAGAGPELDRGYEAIQWNSPRDE
NGNLIPLPLVSNPDNVANFVRNGVTTTNGVSVSNNTEKMNYRIGYTNLNNWGIVPNSDFN
RNNLSINSDLAITDKLRLSSSVNISRTGSDNRPAGNRGANPLEWAYKLSPHIDINDLKDY
WMPGQEGIQQRSQAIGDYNNPYFLAYEVNNSFDRNRVFGNIGLNYQITDEFSLQGKYMLD
MYSERRESKIPMSYTEDPNGGYGIVNLDRYERNIEVMATYQKELTDFSMTYSAGGNLRYN
RGNTMQNATKSEGSGLIVPGVYTLSNTLSDNLVYSSSISEKAVYSVYGLANLGYKDLLYL
DLTARNDWSSTLPAANRSYFYPSASLSAIISDMLPMGNQVDMIKLRAGWAQVGNDTGPYN
LLPTLSNTEEWAGQTRLSVPDGLKTPDLKPEIATSYEFGLEAAAFRNRLRFDITYFNTDN
KNQILPVTLPPSSGFTSKYVNAGLVNSKGWEMVLGLTPIDNEFVLDLNFNVSKYRSTIEE
LTDEVEVFYLWSDSRGGAWSYVGDEIGSIYDRKLVTVEDPESPYYGYPVLDEDGSWQAIN
QANAKNKVGNFNPDFIAGMQASLSYKNWSLSLTFDWRKGGDFVSQTFRYSESDLKTQRFL
DEIISPNGLSGRALRDWLVANKDTHITDGINIVGGPTAESGGFPFEYAVTLNDGVFNPGV
IPVYNDAGEITGYQENLGEEGTKIIPYADNYPWDFFKPAMFDASYIKLRDATLNYSIPTE
TAKKLNMQSINIGLYTSNLILWTKAKIGIDPENAFQPESDGTFKQGIERYNVNPWVIPIG
FRLNAKF