Protein Info for Echvi_3417 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted acyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 685 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 135 to 158 (24 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 8 to 342 (335 residues), 129.6 bits, see alignment E=1.5e-41 PF19040: SGNH" amino acids 439 to 654 (216 residues), 87.1 bits, see alignment E=1.6e-28

Best Hits

Predicted SEED Role

"O-antigen acetylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G283 at UniProt or InterPro

Protein Sequence (685 amino acids)

>Echvi_3417 Predicted acyltransferases (Echinicola vietnamensis KMM 6221, DSM 17526)
MSAIKYRPEIDGLRTVAVLPVILFHLGISWIKGGFYGVDVFFVISGYLITSIILKKLEAG
TFSFTDFWLRRVKRILPALITVVLFCFLVFPFLIFPGDLKYMAQDGLAALFSVANFNAYL
NLGDYWGGRAESSIFLHAWSLSVEEQFYLVYPLLLFLLYKGKKSLLFWVAIIVLLSFCWY
SFAIIFESDQFPLNIFSSNSLAFYMIPSRAWELGAGGIIAVLTKKRFGNRLSIGIKSALS
LIGLVMIFLGYFIPTNGDISFLALLPVIGSCLFILFANETRAAGLLLSNSTMVYIGKISY
SLYLWHWPFCVLLHRYLSPKLGISTLNANLLILVLTAFFSILSYNLVETKTRFYQHTVKL
VGLCTVIILTASSYFMYVHVVNYEKVPFNYVEAYFDYYQMGKKKDMDRSEKGMEKNLEDH
TIRYYPVHDTREAYKSGGLVIGNNKMQKPEIMMMGDSHATGWAKVVNEITDSLSTKIAYY
TQTGFYPFFKIDDLIDDNFFGIDWQGYPTNVIKTLEDPSIKLLIMTARMENRDQEAFEKF
ESFCAHANSLDKKVLIINQVPLWSKWSSKNAAVILSYFNIHPNGSKQYFNRIEKNEMVEI
ANKKLNKIADKYPQVQVFDSYSIFMNGNKVWITDDKDVLYFDDDHLSYQGTLRAKNDLYA
TIKSMLTANNHFNKNLSKQTSLKTN