Protein Info for Echvi_3408 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Nickel uptake substrate-specific transmembrane region.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF10670: DUF4198" amino acids 20 to 210 (191 residues), 36.5 bits, see alignment E=3e-13

Best Hits

KEGG orthology group: None (inferred from 42% identity to dfe:Dfer_1309)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2U7 at UniProt or InterPro

Protein Sequence (237 amino acids)

>Echvi_3408 Nickel uptake substrate-specific transmembrane region. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKTKFSVLFALALFANLGWAMAHALWIETATKGKKGQEQEVKIYYGEYGEGVIEKVDDWY
SDVKDFELWVIDPAGNKTLLETEGDEEYFTAYFTPEMDGVYRLQIGHSAKDLGGEYIYQF
NTASQVWVGNAKETTVEGPKTDLALVLTSPDKGGLKNPLHFKVLFKGEAKEGVTVAVDGP
TGWSKEYVTDVNGEIVVDTPWKGQYIVEAVDTEETSGEHYGSPYEFIWRCATQSIKK