Protein Info for Echvi_3329 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted membrane protein (DUF2339).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 779 transmembrane" amino acids 101 to 120 (20 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 210 to 227 (18 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 375 to 393 (19 residues), see Phobius details amino acids 399 to 415 (17 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details amino acids 461 to 480 (20 residues), see Phobius details amino acids 501 to 519 (19 residues), see Phobius details amino acids 556 to 574 (19 residues), see Phobius details amino acids 586 to 607 (22 residues), see Phobius details amino acids 630 to 650 (21 residues), see Phobius details amino acids 662 to 683 (22 residues), see Phobius details amino acids 695 to 714 (20 residues), see Phobius details amino acids 720 to 740 (21 residues), see Phobius details amino acids 747 to 766 (20 residues), see Phobius details PF10101: DUF2339" amino acids 98 to 769 (672 residues), 256.7 bits, see alignment E=2.9e-80

Best Hits

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G211 at UniProt or InterPro

Protein Sequence (779 amino acids)

>Echvi_3329 Predicted membrane protein (DUF2339). (Echinicola vietnamensis KMM 6221, DSM 17526)
MAENHEKLDALLKKLEALMEKQEAFSKEVKALQNEIHHLKGSNPIPAENQRTTPTPSAQS
PKTPLRPFRQAKKATADMDWDLPPKPKKSKTDFEKFIGENLANKIGIIIVVIGVAIGAKY
TIDNQLIGPLTRIIMGYVVGIGLLGVAIKLKEKYENFSAVLLSGAMAILYFITFAAFSFY
GLIGLSLTFALMVIFTAFTVLAALHYNKQVIAHIGLVGAYAVPFLLSDGSGNVKILFAYM
AIINLGILSIAIKKYWKALYYSAFGLTWLIYLVWFLIDYAQAEHFGLALTFPSLFFVIFY
LAFLAYKFLQREQFSSSDIIMLLSNAFIYYGLGYAILSNHTETAHFLGLFTLANAVIHFI
VSVPIYRRKQADRNLFFLAIGLVITFITLAFPVQWDGNWVTLLWTSEAALLFWIGRTKRV
AFYEKLSYPLMVIAFFSLIHDWSIVYGAYFLEEEANHFSPLLNIHFLSSMLFLVGFGWIY
QVQANTSSSPAWKPSYGTAKLLAFGIPAVLLFTTYYAFLAEINAYWQQLYVISEVEMKSA
MDTIEMFRNEDLIKFKIIWGINYTLFFLTGLAFLNGKKYRNRSLAWTNLTLIGLALLMFL
SGGLYALSELRVSYLAPPHPEYIEYGVRNILVRYFSFIFVALALGAAFAYQKMPFMKKSF
DMAFDFGLHLTLIWTLSSELIHWMDMAGWSRQYKLGLSIFWGVYALVLIGIGIWKNKKYL
RISAIVLFGLTLLKLFFYDIIHLDTIAKTIVFVSLGILLLIISFLYNKFKHLIADETNH