Protein Info for Echvi_3308 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF13509: S1_2" amino acids 7 to 64 (58 residues), 66 bits, see alignment E=3.9e-22 PF17783: CvfB_WH" amino acids 221 to 277 (57 residues), 75.7 bits, see alignment E=3e-25

Best Hits

KEGG orthology group: K00243, hypothetical protein (inferred from 46% identity to dfe:Dfer_5129)

Predicted SEED Role

"S1 RNA binding domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3I1 at UniProt or InterPro

Protein Sequence (279 amino acids)

>Echvi_3308 Uncharacterized protein conserved in bacteria (Echinicola vietnamensis KMM 6221, DSM 17526)
MDTIKELGNISTLPITRFTANGAYLNLSNGTEVLLPKGYLLGDEKEGEEVAVFVYTDSED
RLVAITDRPVALVDEFAVMEVKEVTKFGAFMDWGLPKDLFVPMSEMGKPMKEGEQHLVMI
CVDFKTNRLIGVSKYQDFMLTDTTIFEEGQEVDGLVFESTDLGYKVLINQHYEGLLYENE
TFKDIAVGDNIKAYIKKRRDDGKLDLQLTPIGRQKYEEGAEKILNLLKVKRFLPLHDKSS
PEEIKKTLGMSKKHFKQSIGQLYKSRKIEIKTDGIALVD