Protein Info for Echvi_3223 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Mn-dependent transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 PF01325: Fe_dep_repress" amino acids 3 to 40 (38 residues), 36.9 bits, see alignment 6.9e-13 PF02742: Fe_dep_repr_C" amino acids 45 to 114 (70 residues), 94.9 bits, see alignment E=5e-31 PF04023: FeoA" amino acids 126 to 193 (68 residues), 29.1 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: K03709, DtxR family transcriptional regulator, Mn-dependent transcriptional regulator (inferred from 54% identity to ran:Riean_0021)

Predicted SEED Role

"Mn-dependent transcriptional regulator MntR" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>Echvi_3223 Mn-dependent transcriptional regulator (Echinicola vietnamensis KMM 6221, DSM 17526)
ENGDVSVKDLSDQLSIKMPTATSMMKKLAEKGLVHYESYKPLKLTSRGLKEAGLIVRKHR
LTEMFLVEKMGFSWEEVHEIAEQVEHVHSPLFFERMDKLLGYPTIDPHGSPIPDNEGNVE
KPKYNKLSDCKAGDKFTLLAVANSSEEFLHYLNSHRLKLDTEITVLSVEAFDASMTVSYG
NIPQATLGEAACKNLLGRRG