Protein Info for Echvi_3214 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Putative silver efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1274 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 366 to 383 (18 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details amino acids 500 to 522 (23 residues), see Phobius details amino acids 535 to 562 (28 residues), see Phobius details amino acids 583 to 603 (21 residues), see Phobius details amino acids 615 to 640 (26 residues), see Phobius details amino acids 652 to 672 (21 residues), see Phobius details amino acids 1083 to 1102 (20 residues), see Phobius details amino acids 1109 to 1129 (21 residues), see Phobius details amino acids 1150 to 1170 (21 residues), see Phobius details amino acids 1211 to 1229 (19 residues), see Phobius details amino acids 1239 to 1262 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 523 (518 residues), 312.6 bits, see alignment E=2.7e-97 amino acids 851 to 1132 (282 residues), 157.4 bits, see alignment E=1.9e-50 amino acids 1151 to 1263 (113 residues), 78.2 bits, see alignment E=1.7e-26

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2A4 at UniProt or InterPro

Protein Sequence (1274 amino acids)

>Echvi_3214 Putative silver efflux pump (Echinicola vietnamensis KMM 6221, DSM 17526)
MLNKIIKYFLENKLVTVLILIGFIAWGIVTAPFGWQIGALPSDPVPVDAIPDIGENQQIV
FTQWQGRSPQDIEDQISYPLTTYLLGIPGVKSIRSSSIFGFSSIFIIFSEDIEFYWSRSR
ILEKLSSLPSGLLPEGVQPALGPDATALGQVYWYTIEGRDKDGNPTGGWDLHEIRTVQDF
YVKYGLNATEGVSEVASIGGFVQEYQIDVNPDALKAYDIPLHRVMQAVQKSNKDVGAKTI
EINQAEYLVRGLGYIKKVEDIEKAVVAVQENVPVRIKDIGVVTLGPSTRRGLLDKDGAEV
VGGVVVARYGANPLQVINNVKDKIKEIAPGLPKKTLADGRESQLTIVPFYDRSELIYETL
GTLEEAISLQVLITILVVIVMVYNLRASFLISSILPIAVLMVFIAMRYFGVDANIVALSG
IAIAIGTMVDLGVILSENIIKHIDEAPPGQKLIDTIYNGASEVGTAILTAVSTTIVSFIP
VFTMQAAEGKLFGPLAFTKTFALVAALLVSLLIMPTLAHWFFGFKINNKFLKKYGGYALV
LFGILGLFTGQIWGGVLLVLFGTIGILKNIFDTKKANFSKPVLFLYNYAELIIVLIGVTW
LLAKYWLPLGASKSLLLNFIFVTLLVGFILGSFTLLEYYYKSILKWCLDNKITFLLIPTF
LILLGANVWLGFNTIFGFIPKALDNLGWDVRTTTVWSGLTHTFPGVGKEFMPSLDEGSFL
LMPTSMPHSGIEFNRKVVGQLDMLLTNIPEVELTVGKLGRVESALDPAPISMYENVINYK
PEYMLSEKGHRIRFKVDKEDRFILNSGDSLSNEEAINRGVVLEELIPDDNGNYFRNWRPQ
IESPDDIWNEIVKVTKIPGVTSAPKLQPIETRLVMLQTGMRAPMGIKVYGPDLKTIEDFG
LQLEEVLKNVPSVKAEAVFADRIVGKPYLHLNINRDEISRYGLNVEDVQQTIETAIGGMK
ITSTVEGRERFPVRVRYPRELRDDPEALGKILLPTPTGAQIPISQVVDFEYVRGPQAIKS
EETFLVGYVLFDKRDGYSEVGVVNDAQAAIQERIDTGDLVVPAGVSYKFSGSYENQVRAE
KRLSIIVPLVLGIVFLILYFQFKSVATSLMVFTGIAMAFSGGFIMLWLYGQTWFADFSLF
GTNFRDLFQIHTINLSVAVWVGFIALFGIATDDGVLMATYLDQSFNRNKTDSLKGIRAAT
VEAGQRRIKPAVMTSATTIIALLPILTSTGRGADIMIPMAIPAFGGMFFAAVTFFIVPVL
YAMREERKFKKTQS