Protein Info for Echvi_3196 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Copper chaperone

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 51 (19 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details PF02411: MerT" amino acids 1 to 102 (102 residues), 46.4 bits, see alignment E=3.7e-16 PF00403: HMA" amino acids 122 to 168 (47 residues), 43.7 bits, see alignment E=3e-15

Best Hits

KEGG orthology group: None (inferred from 65% identity to zpr:ZPR_3374)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G286 at UniProt or InterPro

Protein Sequence (173 amino acids)

>Echvi_3196 Copper chaperone (Echinicola vietnamensis KMM 6221, DSM 17526)
MAALLSSLCCITPVLALVAGASGIASTFSWLDPARPFFVGITVVVLGFAWYQKLKPKAKG
EIECACEEDLQPSFWKTRKFLGIVTVFATLMLTFPLYAHIFYPKSEKQVIIVDKSDIQTV
NFQIKGMTCQGCADHVEHEVNKLSGILKVTASYEQGNAIVEFDNTKTGILEIE