Protein Info for Echvi_3175 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Bacteroides conjugative transposon TraN protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR03780: Bacteroides conjugative transposon TraN protein" amino acids 12 to 291 (280 residues), 340.7 bits, see alignment E=3e-106 PF13595: DUF4138" amino acids 42 to 290 (249 residues), 350.1 bits, see alignment E=3e-109

Best Hits

KEGG orthology group: None (inferred from 86% identity to psn:Pedsa_1554)

Predicted SEED Role

"Conjugative transposon protein TraN" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1I8 at UniProt or InterPro

Protein Sequence (298 amino acids)

>Echvi_3175 Bacteroides conjugative transposon TraN protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MNSLFKTLGAITLIIGFAMPSFAQDNATRKPLALGKIEPYQMEVTYDKTSHLIFPTAIRY
VDLGSEYLIAGKADDAENVLRVKASVKDFEQETNFSVITNDGRFYSFNVHYSANPLALSY
DLLTMQKAVEKANGNDVLFEELGSSSPSLAGLLMETIYKKDKRIIKHIGAKSFGIQFILK
GIYIHNGKYYYHTEIRNKSNVPFEIDFINFKVVDKQVAKRTVVQERPLIPLRTYKPLGGI
SGNMTEQNVFLLDQFTIGDDKILQIEIFEKNGGRHQTLQVENLDLIKARLIDDMHLKI