Protein Info for Echvi_3117 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PhoPQ-activated pathogenicity-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF10142: PhoPQ_related" amino acids 36 to 389 (354 residues), 338.7 bits, see alignment E=1.7e-105

Best Hits

Predicted SEED Role

"PhoP/Q-regulated protein PqaA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3C6 at UniProt or InterPro

Protein Sequence (445 amino acids)

>Echvi_3117 PhoPQ-activated pathogenicity-related protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MHRLHHGLLIVLFACCLSVPGFTQEKHAAITNFLSSPSPEFTVEWVDEIGLPHQTQYELL
LTSQEWKGYTWKHRLVILVPERVQYDQALLYIGGGRLENNLPKQRDRDDAVVKGLENLAV
DNNAIVAAIFQVPNQPIFDGKVEDEIISYTLHQYQETGDETWPLLFPMVKSVQRAMDAVS
TFTRDETGHEVHDFLLTGLSKRGWTTWLTGSQDDRVNAIAPMVIDVLNMPVSLQYQIEMW
KDYSPEIQDYVDLGIPQTSNTPEGTATISMVDPYAYRNQLDMPKLVFMGTNDPYWPIDAA
KNYWHEIPGDNDLVYIPNVEHGLGDGQIALQNLSAFFEYQCLQQALPQVKMDVSKSGQKK
LTVSCSFPSHVPDKVLIWEAKSPEDMDFRDEKWKSKSVKNNQTKVTLPKKGQKTFYIAYH
FTSPLGKPYYISSQIVRCDADGVIK