Protein Info for Echvi_3114 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane receptor for ferrienterochelin and colicins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07715: Plug" amino acids 117 to 219 (103 residues), 77.1 bits, see alignment E=1.5e-25 PF00593: TonB_dep_Rec" amino acids 252 to 738 (487 residues), 123.6 bits, see alignment E=2e-39

Best Hits

Predicted SEED Role

"TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1C5 at UniProt or InterPro

Protein Sequence (768 amino acids)

>Echvi_3114 Outer membrane receptor for ferrienterochelin and colicins (Echinicola vietnamensis KMM 6221, DSM 17526)
MIKKITCTWLFCLISLVSFASKEPLEILIQDVKGSPITHGIIKIGDGKVLSVNSNGQAKV
DISAYSASVELEIYAMGFEQLKLTVGELMNNPRVVLKESLGQMDEYVLSATRTDRSVEDL
PMPVTILTQEKIRETGAFRLSDILGEQTGLQLVADHGTGLQMQGLDSEYILILLDGEPLI
GRTAGTFDLDRISVSNIERIEILRGPSSAIYGSEAMAGVVNIITKKQREGFSANVIGQYG
SFNSLDLGAEVGLNTNGWNVYGYYDYFSTEGYDLNTENIGKTKAPHKAQTGQLKLGKSLG
EKWKFNLNGRIYKDDYQDVIGVSSGGETLTADMAGDSRDININPSVRFKPNTDWTFTLRN
MTTLYDTHSNTVFAETGEVVDEENFSQRYHRTEMQTDFRLDEKQLLTIGVGHQLETVDAT
RYDDNNRFNSGYLYLQHQWNPTKKWNVVTGVRGDLHSEYAGRISPKIAAMYAFSDNFSWQ
GSVGAGFKSPDFRQLLLNFNNAAVGYYVYGAMLVEEGVRQLEEQGQVQQLLMDPSSFGDL
QPENSWAINTGFRWKLTDDLLLNTNFYRNQISNLIETAAVARLTNGRNVYSYINLNEVIT
QGAEVEANYRLGSQWRFSLGYVYLDSRDEEVIEGIKNGEYFKRNAQNQTRRVERSDYGGL
FNRSRHSGNVKVNFWERHSGINVALRGIYRGKYGYGDINGNQILDDPSEYADGLMQLHLT
LYKEFDRGIRLETGVRNITDALNQYDSTNPGRTYFVRVTASLDRLIGE