Protein Info for Echvi_3111 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type Fe3+-siderophore transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details transmembrane" amino acids 76 to 95 (20 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 261 to 287 (27 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details PF01032: FecCD" amino acids 24 to 349 (326 residues), 306.7 bits, see alignment E=1.7e-95 PF00950: ABC-3" amino acids 141 to 339 (199 residues), 23.7 bits, see alignment E=3.2e-09

Best Hits

Swiss-Prot: 37% identical to Y1471_HAEIN: Probable ABC transporter permease protein HI_1471 (HI_1471) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 52% identity to alv:Alvin_1690)

Predicted SEED Role

"Hemin ABC transporter, permease protein" in subsystem Hemin transport system or Iron acquisition in Vibrio or Putative hemin transporter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZI5 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Echvi_3111 ABC-type Fe3+-siderophore transport system, permease component (Echinicola vietnamensis KMM 6221, DSM 17526)
MHLSLGYKTVSKHRSMIISASAVLLLMCVLLSLVTGAYAISINEVAEILASKVGFASKEG
IAAEKMAVLWAIRFPRVVLGVLVGGSLAVAGACLQGLFRNPLVEPAIIGVSSGSALFAVI
VIVFSSSIGWQLQSVFGAFALPLAAFTGGLLNTFLAYRLASKAGKTDISILILAGVAINA
LSAALIGLVIYYGDDHAIRNFTFWSLGSLGGASWSKVYIVGVFIFLSTVVMLSFPRSLNA
LAVGEAEAYHMGINVQRVKHLLLFFSALAVGAGVSVTGAIGFVGLVVPHLVRMLLGADHR
ILLPMAFLFGAILMLVADVVSRLVVAPAELSIGIITALIGAPFFISILMNFKKQRVL