Protein Info for Echvi_3094 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Protein of unknown function (DUF3307).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 42 to 70 (29 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details PF11750: DUF3307" amino acids 6 to 110 (105 residues), 104 bits, see alignment E=3e-34

Best Hits

KEGG orthology group: None (inferred from 53% identity to cat:CA2559_09828)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1A5 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Echvi_3094 Protein of unknown function (DUF3307). (Echinicola vietnamensis KMM 6221, DSM 17526)
MNLVQLFILQLLAHMLADFYFQNDRLAAQKNTHGFRSPFLKWHILIVFLLSWGLSFQAYF
IYGALVIALTHYIIDGLKVYLNRSKWLGKYAFFIDQALHLLVIVVVTMGYGLYLGINPWW
EMKLSAHSLMIIFAYMVCLKPSNIFIKETLKAYEIKVPGTNDLPNAGKLIGVLERILVLT
FILLGEFQAVGFLIAAKSILRFKNDDILKAEYVLIGTLISFGIAILLGTFVELL