Protein Info for Echvi_3064 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: FeS assembly protein SufB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 TIGR01980: FeS assembly protein SufB" amino acids 15 to 472 (458 residues), 628.3 bits, see alignment E=3.2e-193 PF19295: SufBD_N" amino acids 147 to 202 (56 residues), 39.8 bits, see alignment 3.8e-14 PF01458: SUFBD" amino acids 219 to 451 (233 residues), 242.4 bits, see alignment E=4.5e-76

Best Hits

Swiss-Prot: 68% identical to YCF24_CYAPA: UPF0051 protein ycf24 (ycf24) from Cyanophora paradoxa

KEGG orthology group: K09014, Fe-S cluster assembly protein SufB (inferred from 84% identity to mtt:Ftrac_0906)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufB" in subsystem Staphylococcal phi-Mu50B-like prophages

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G170 at UniProt or InterPro

Protein Sequence (481 amino acids)

>Echvi_3064 FeS assembly protein SufB (Echinicola vietnamensis KMM 6221, DSM 17526)
MSKDNEILEEFTSKEYEHGWSVDFEADEAPAGLNEEIIRWISAKKEEPTWLLEWRLKAFR
TWQNMTEPDWANVNYPKVDFQALKYYSAPKQKSKPKSLDEVDPELLQIYERLGISLNEQK
KLQGIAVDAVLDSVSVGTTFKDTLSKLGIVFCSFSEAVHEHPELVKQYLGSVVPMTDNYY
AALNSAVFSDGSFCYIPKGVRCPMELSTYFRINAANTGQFERTLIVAEDESYVSYLEGCT
APQRDENQLHAAVVEIYAAKDAEVKYSTVQNWFPGDKDGKGGIYNFVTKRGICAGDNSKI
SWTQVETGSAVTWKYPSCILKGDNSVGEFYSVAVTNNYQQADTGTKMIHIGKNTKSRIVS
KGISAGHSQNSYRGQVQVMKRAVNSRNFSQCDSLLMGDRCGAHTFPYIDIQNPTAKVEHE
ATTSKIGEDQIFYCNQRGIDSEDAVALIVNGYAKEVLNQLPMEFAVEAQKLLALTLEGSV
G