Protein Info for Echvi_3062 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: FeS assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF19295: SufBD_N" amino acids 6 to 150 (145 residues), 50.6 bits, see alignment E=1.8e-17 TIGR01981: FeS assembly protein SufD" amino acids 131 to 404 (274 residues), 278.5 bits, see alignment E=2.7e-87 PF01458: SUFBD" amino acids 165 to 388 (224 residues), 252.5 bits, see alignment E=3.8e-79

Best Hits

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G378 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Echvi_3062 FeS assembly protein SufD (Echinicola vietnamensis KMM 6221, DSM 17526)
MDIARKGANGTLPKLREMAIEVLEKDGLPAPKAEEYKFSPISKKLENGISNLQIAGKLTL
TSEQVKDVLIPELEADILVFNNGQFDASLSDYAAENYTIAPFSKIDTNAANLIGTIAKPE
KEPFNALNSVLFADGIHIHIAKNKVVEKPILLLHFCQATDGQVVAPRVFIHGEANAEATF
IERIISVDEEPYFLNSLTEVKVDDNAHLYFHKIQNESDAAIDVNNFEADIHRDATLTTVT
LSLKGDFIRNNLTLNLRDSGCEGNMYGLYLLNGGTHVDNHTNVDHTMPHADSNELYKGIL
ADKSRGVFNGKIFVRQDAQKTNAFQQNNNILLSEDAIINTKPQLEIWADDVKCSHGCTTG
QLDEEALFYLQARGIGKVEAKNLLLYAFAGEILDHIKIEPLREYCIALVQERLGKL