Protein Info for Echvi_3024 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 24 to 112 (89 residues), 65.3 bits, see alignment E=8.5e-22 PF13620: CarboxypepD_reg" amino acids 24 to 88 (65 residues), 44.4 bits, see alignment 3.6e-15 PF00593: TonB_dep_Rec_b-barrel" amino acids 400 to 656 (257 residues), 36.1 bits, see alignment E=1.5e-12 PF14905: OMP_b-brl_3" amino acids 444 to 795 (352 residues), 79.4 bits, see alignment E=5.8e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G128 at UniProt or InterPro

Protein Sequence (922 amino acids)

>Echvi_3024 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MRNTYLLLFFFMILCGNVLGQNMLQGKVVDKESNETLPGAYIFLKDQDNNTLSNAYTDEN
GEFKITKPSKNTFTLEISFIGYKTLRKNFENSDLSSFGTIALEEDANQLQEVEIQGQAMT
GEVKGDTVSFNAHAYKTRSQASAGELVRKMPGVRMNGGTIEVQGETVGRVLVDGEPFFGD
DPAMAMQNLPVAVIDKIEFLDQKSDQARLTGFDDGETIKTINIITKEETRGGKFGQLFAG
YGTDDNYLAGGAVHFFEGAQRLSLLGLSNNINQQNFSADDLTGAFGSGNSRGWGRRDSDD
ITVRERPGITKTNAVGTNFTDKFDDGKARFSGNYFFNDSENVLNRMSTREYILPSDSLQF
YDEERHEENNSQLHRINMKLEYDITEKHAIIWRPRFSYEKGNSTNRLAAVNLYDQSTPIS
ETVNATESTNEGLRFDNDFTYRYKFNKPGRTISTSIETGYRDNKSESRLISVNQNYQSGN
LDSLIQRTSNENGSFEYEAEIEYTEPIGEHSQLRIEYEIGNDKSDNLQDVSQREMESTIF
ERDSTLSNKFENNYQRQELSLGYRYAGETWRLFSSLNYEVAKLNSDRLFPGYENTKRTFK
NFVPRLYVDYEPNKSLSIRFGYRTDTDAPSVRQLQDVINNSNPLQISMGNPNLEQEYEHR
IFSRIRKINLENSKSFFMWFSAGLRNNFMGTSTFIASQDTLIQNDVLLRQGGQLSMPVNL
SRAWNANTSISFGFPLNFMKSNLNLDTRIRYSNTPGLINDQLNNNHNLGLGQGVGISSNV
GEKLDFNVSTSGNYNLVKSSIQENRNTEYYSQETRLDLYWNFWKGFFISTNVNNQFYIGL
GEAYDQSVWLMNADFGYRFPPTQNLELKMTVFDLLNQNTSINRSVTDVYIETERTAVLNQ
FFMLTLTYNLRAFGGNKPVYDN