Protein Info for Echvi_3023 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 766 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 31 to 114 (84 residues), 71.2 bits, see alignment E=1.2e-23 PF13620: CarboxypepD_reg" amino acids 31 to 105 (75 residues), 47.3 bits, see alignment E=4.5e-16 PF07715: Plug" amino acids 124 to 226 (103 residues), 60.3 bits, see alignment E=4.9e-20 PF00593: TonB_dep_Rec_b-barrel" amino acids 345 to 716 (372 residues), 79.6 bits, see alignment E=9.1e-26

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 47% identity to shg:Sph21_2549)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2N5 at UniProt or InterPro

Protein Sequence (766 amino acids)

>Echvi_3023 Outer membrane receptor proteins, mostly Fe transport (Echinicola vietnamensis KMM 6221, DSM 17526)
MIKMFIRVILVLIFAANCLPALSQVKCAFDVKGKVIDQESQEPVEGAYIWIKELEKGAVT
NHNGNFHFRDICEGHYELNVEILGYASKNIQLNVHENVNMTIRLESKDYLIDGVEIVGHK
DAVNTLNSITHLGKDLLDENRGGNLGETLKALPGVTTFTTGANISKPVIHGMHSNRIMIL
NNEVRQEGQQWGGEHAPEVDPFMAEDISVIKGAETVRFGSEAMGGVILVTPPKLPVAAGT
SGTATLVGGSNGWNGAAAFSFEGGLKDLEGFGYRIQASSRIGGNIKSPAYYQDNTGMKEL
NFSGAVGYNSKKLGMELFYSRFATTIGILSDSHTGNSSDLEELIANGRPFSNPDFTYHIE
NPRQEVTHQLLKAKGHYHLNNDGVINLTYAFQQNNRQEFDIRRGELNDRAALDLELFTNT
LDINYEHPSSKNWNGSIGISALQQANNNIPGTGVTPLIPNYDMVNLGAFMIEKYTKGPLE
LEGGARFDYRYVDAARYNQGELDEQDFTFQNFTAFLGAGYSLNKNWLLTTNLGSAWRPPN
INEQFSQGLHHGAAAVEIGDPNLVSEQALKWVNTVNYSSEKLNAELTGYYHKINNYIYLN
PTGEEYVSLRGTFNVFEYLQTDAGFWGIDLTTDYTILPSLEWFIKGSLIRAKNLTDQNYL
PFIPTDRLETGLVYQADKIGKLELSHLSVAKQRREPDVDLAPAPPGYNLWTARISRDLLV
KEKSSLKGSLGITNIFNTEYKDYMNRFRYFTHEMGRNFTLRLKYEF