Protein Info for Echvi_3012 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF02646: RmuC" amino acids 120 to 408 (289 residues), 252.4 bits, see alignment E=2.6e-79

Best Hits

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 51% identity to bvu:BVU_3249)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G328 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Echvi_3012 Uncharacterized protein conserved in bacteria (Echinicola vietnamensis KMM 6221, DSM 17526)
MELILIGLIVMNLLLSSWMIIKHGQGRSANERVTEDLAAIKQDLNVQMAENRKELNLQMN
QQFKLVMDMVRESGKDQGAVLKDFGKLFRENVREFNDLQREKFSELERRQEKMLVATEAR
LEKMRETVDEKLQKTLETRLGQSFEAVSKQLQAVQKGLGEMQQLATGVGDLKRVLTNVKS
RGILGEYQLQSILENILSPDQYISNAVMKRGSSERVEFAVKLPGNNESPVFLPVDAKFPQ
EAYHRLLEAYEGGDKSAMEVAKTALYRAVRKSAQDISQKYIYPPYTTDFAVMFLPMESLY
AEVIREGGLAQQLQQDFKVVVAGPTTFAAMLNSLQMGFKTLAIQKRSSEVWKVLGAVKTE
FGKFGDLIQKAQKKLHEANNELDTLVGTRTRVIQRRLRDVEALPEDEKGKFLDS