Protein Info for Echvi_2974 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: capsular exopolysaccharide family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 514 to 535 (22 residues), see Phobius details TIGR01007: capsular exopolysaccharide family" amino acids 578 to 781 (204 residues), 134 bits, see alignment E=2.6e-43 PF13614: AAA_31" amino acids 598 to 739 (142 residues), 31 bits, see alignment E=1.2e-11

Best Hits

Predicted SEED Role

"Tyrosine-protein kinase Wzc (EC 2.7.10.2)" in subsystem Colanic acid biosynthesis (EC 2.7.10.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.10.2

Use Curated BLAST to search for 2.7.10.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0Y7 at UniProt or InterPro

Protein Sequence (807 amino acids)

>Echvi_2974 capsular exopolysaccharide family (Echinicola vietnamensis KMM 6221, DSM 17526)
MNNNEFDYYTEGSGSNDTFDFKELFSKYLRFWPIILLSMVLFGSAAYFYNQTQPSEYKVS
GKLLIEEDLQRGNILNLTNMPQDLNNSLINKMANDGHQLKSYNLANEVLDKMDFDVEYYQ
EGIFKDHEIYQSSPIKVEVDWNHPQLTENKFKIEWKNAENYIISYISDEYMLDTPSDGKL
EHIEISTTPKAFPFNRWIETAHARIKVTPVEKLAPGAVKVILRSRKSLLAQYTGENLTIA
PVDAMSSILNVSLITTVPDKGSDYVNTLLETFLDNSLEEKNLQARKTVDFIDNQISGVSD
TLSTIENKLQSFRSQNKTYNIGTEGSSIFQKITELESELNQENFKNDYYKNLQSYLTKED
YSDIILPSGIGIDDPILNKLIQDLILLQSERSQYLATQTASAPNVKEVSKKIEDLNKSII
EVLKNTISNSDRLVSSLQTRLNRLESEFKKLPSTEQDLLRIQRSFTLNENIYTFLMQRRA
EAAISMVSNTAPDKIMESAKPSYTPLPLKPLTNYIIGIAVGFILPVLIISIMIFTNVKVK
DRKELESKLNNPVLTSVGHNSNKNNLVVLNKNKSSIAEAFRSLRTNLTFIVPKEEKITIA
ITSSIAGEGKSFTSMNLASAYSIADKKTILVGCDMHKPKLFNDFKLSNAVGLSTYLSKQV
NDVNAVIQKSPYPNLDLMVAGPTPPNPAELLIGNQFETMIKELKEIYDVIIFDTPPIGLT
SETLAVLKMVNVTLCVVRYNYSDHSFIEDINSLKDKKGFRNIYTVFNDVPSKELNYGGYG
YGYYSDDKNKSSMINKIFKGGSGRAAV