Protein Info for Echvi_2902 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 41 to 464 (424 residues), 257 bits, see alignment E=1.7e-80 PF02321: OEP" amino acids 74 to 255 (182 residues), 57 bits, see alignment E=1.2e-19 amino acids 282 to 463 (182 residues), 83.6 bits, see alignment E=7.8e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2D4 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Echvi_2902 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRFINLIFWGLLLFVGWYPSGCKVKSPPTSEELQEESFANFILPSTWQEAQEGQSDSTE
FTENWLAAFSDPLLDTLVKEAIAYNTDLRISQSRLEQAEGYVKMAQGALRPAINGMAREN
SKLGGSFAGGLNGAVFSASWEIDIWGKLRNTKHAQIEEYEALGMEVSYARLSLAAAVVRN
YYLATELYLEKSLAEEMVKLSETLVSLAQKRLDVGIGNEKDVSVAQANLSSAEDGSRLLD
LAYHNQLRALELILGRYPQAEVAVRDSLMKINSTIPAGIPLQLLERRPDVLAAQHRFNAS
FHRVRSAIAAKLPQLSLTGNFGVVNSQVIQLVPEFSNPIRSLGGSLIAPIYQGGMLKQNV
EIKTMEQEQATIEYAQTVLNAINDVETALETVQNIDSRETILTREVAQNQKAFELEQIAY
KVGKSDLRNVTLQQMDLYSSKITLLRVQTEKIIQRVNLYLALGGNM