Protein Info for Echvi_2901 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14607: GxDLY" amino acids 23 to 168 (146 residues), 150.3 bits, see alignment E=3.4e-48 PF14606: Lipase_GDSL_3" amino acids 178 to 358 (181 residues), 220.6 bits, see alignment E=2e-69

Best Hits

KEGG orthology group: None (inferred from 49% identity to fbc:FB2170_06070)

Predicted SEED Role

"Platelet-activating factor acetylhydrolase IB gamma subunit (EC 3.1.1.47)" (EC 3.1.1.47)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.1.47

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2S1 at UniProt or InterPro

Protein Sequence (362 amino acids)

>Echvi_2901 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRFVLMFSLVLIHTFLCAQELVWFDPLMAEKEVVEGQGWSGIEFNRLPDDAKAQVREPV
WGLSRNAAGLLIRFASDAAEVHVKFKPGSRLSMPHMPSTGVTGLDLYARDDRGSWRWVRG
KYRFSPEEVSYTFVVPNATGIHREYQLYLPLYNSLSALKVGVMKDDTFAFMSKREAAPIV
VYGTSIAQGACASRPGMAWTNIVGRSLDVPMINLAFSGNGRLEPEVLDYVKQIDAAVFVL
DCLPNLGPWGGFTEEVVKAKILAAVRTLKAAHPKMPVLLVEHAGYSDGWMDPDRKSAYTN
LNEWAASCFQTLKDSGVKGLYLLSKEEMGLGNEDFVDGTHPTDLGMQHYADAYIKKLKEI
LQ