Protein Info for Echvi_2887 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Cytochrome c, mono- and diheme variants

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 42 to 66 (25 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details PF14715: FixP_N" amino acids 107 to 153 (47 residues), 64.7 bits, see alignment 7.4e-22 PF13442: Cytochrome_CBB3" amino acids 196 to 268 (73 residues), 50.9 bits, see alignment E=2.3e-17 PF00034: Cytochrom_C" amino acids 197 to 272 (76 residues), 39.9 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: K00406, cb-type cytochrome c oxidase subunit III [EC: 1.9.3.1] (inferred from 42% identity to sli:Slin_3560)

Predicted SEED Role

"Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)" in subsystem Terminal cytochrome C oxidases (EC 1.9.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2C2 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Echvi_2887 Cytochrome c, mono- and diheme variants (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKNKAVLLTTFMGLASSTAFAQNVEEPSFWSALGTMNSSELMLLLMIIVMLGVLVLLLL
LMIYLMSFMVTLLKRENPALANQPSWWEQFNERFVSGKLKPVEEEGEIMLSHNYDGIREL
DNFMPPWLTYLFYGSTIFAIFYLINYSAIGWGKTPEEEYQAQLKAEEIAAEKRKELALAS
IDESNVEFDQSEFVLTAGGTIYQNNCVACHAADGGGGVGPNFTDQYWLHGGSIQDVFKTV
KYGVPDKGMIPWQDQLSPEEIMQVSNYILSLQGKTPANPKEPQGELYVPDNEEGETDAAD
STGVQPDSVKVDV