Protein Info for Echvi_2847 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14322: SusD-like_3" amino acids 98 to 244 (147 residues), 32.3 bits, see alignment E=1.2e-11 PF07980: SusD_RagB" amino acids 375 to 529 (155 residues), 108.4 bits, see alignment E=5.6e-35

Best Hits

KEGG orthology group: None (inferred from 62% identity to hhy:Halhy_0390)

Predicted SEED Role

"SusD, outer membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G289 at UniProt or InterPro

Protein Sequence (529 amino acids)

>Echvi_2847 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKFNWIYTTSMILGLLGVVSCTDLDLEPYNEVTSIQVYEDFSNYKSVLAKLYAGLAVSGQ
QGPSGKPDISGLDEGASTYIRAYWKLQELPTDEAIIAWNDQGLPQLNTSEWTSENNFIAA
MYYRIFYQISLANEFIRETSDEKMASRGISEADQEVGRVYRAEARFLRALSYYHALDMYG
NVPFVTEADAVGAFFPEQTNRADLFAYIESELMEILPTLVDARQNEYARADKAAAWMLLA
KLYLNAEVYIGEDRYSDALTYLNEILNSGYSLEEDYNYLFLADNHLCRDELIFSVAFDGV
NTTTYGGTTFLVNAAVGGTMDRAEFGIPGGWQGLRTRPEIVALYPVTDGSTDARALFHTE
EQNLDIEEIAIFQDGYAVKKYKNVTRTGQRGSSPGTDIVDTDFPMFRLGDVYLMYAEAVL
REGSGGSQAQALAYINMLRERAYGDAAGNITSGELTLDFILDERARELKWEAHRRTDLIR
FDRFTGDSYTWQWKGGDFEGTSVEAYRTLYPLPVADLTANPKLTQNDGY