Protein Info for Echvi_2843 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 53 to 80 (28 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 333 to 364 (32 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0L6 at UniProt or InterPro

Protein Sequence (375 amino acids)

>Echvi_2843 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MSLKVFKVFYNIFTKSFYRQKGALFLVVFGILFSHIFWMKPLGGHLTAAQETYFHLILLL
SFAKEPIMVIVFFFLTLLWALESWKHIKAVLNLSSNRFIFYVFNSFGFKTQFHTWLLTYG
LIFLPLLLIALSSLAVGLSYGYYFLPFILPVITILGMCCLSFITLSHINNIHLHKSIHYS
LPFRRWLNKSFSNLFLFQLTHHLKLPLVLTKLLSGLIYAAFLILFDDLWSGMKVQMLLAL
VLACNNSYLIYEYRIFEETALKIMRNMPFSLVKLMFQKATLIIYLLLPEMVLICLNTSFP
NQFILLLFCFSTAFLLCALLFQSIASAHYIRRLFFLFFTCTLLILFGLFWILIPMVTISA
VILFKKFYFKFEYLP